Journal of Iranian Medical Council

Journal of Iranian Medical Council

The Role of ceRNA Networks in the Development and Progression of Gastric Cancer

Document Type : Review article

Authors
Gastroenterohepatology Research Center, Shiraz University of Medical Sciences, Shiraz, Iran
Abstract
MicroRNAs or miRNAs bind to miRNA Response Elements (MREs), a location on target transcripts, causing either transcript destruction or translational inhibition. NcRNAs with MREs can compete with mRNA as a miRNA sponge and are involved in a complex regulatory network that regulates the transcription of mRNAs through miRNAs competitive binding. According to the ceRNA hypothesis, ncRNAs, including lncRNAs, circRNAs, and pseudogenes, contend against mRNAs in binding to miRNAs via miRNAs’ MRE. MicroRNA is the most important part of the ceRNA network and ncRNAs and mRNAs are other components of the ceRNA network. LncRNAs, circRNAs, and pseudogenes have been demonstrated to play a key role in cellular processes like cell proliferation, cell growth, apoptosis, and differentiation. CeRNA networks are involved in many cancers, including liver, breast, lung, and Gastric Cancer (GC). Therefore, the study of the ceRNA network in GC will help to understand how the disease develops and progresses, as well as identify new therapeutic approaches.
Keywords
Subjects

Introduction
Non-coding RNAs (ncRNAs) can not encode proteins, but are widely expressed in organisms (1). Based on their length, they are sorted  into two main groups: small ncRNAs (less than 200 nucleotides) and long ncRNAs (lncRNAs, more than 200 nucleotides). Small ncRNAs include several subtypes such as microRNAs (miRNAs), small nuclear RNAs (snRNAs), transfer RNAs (tRNAs), PIWI-interacting RNAs (piRNAs), small nucleolar RNAs (snoRNAs), circular RNAs (circRNAs), and QDE-2-interacting RNAs (qiRNAs) (2). Among these, miRNAs, typically about 22 nucleotides long, regulate gene expression at both the transcriptional and post-transcriptional levels. They bind to complementary sequences on the target transcripts called miRNA Response Elements (MREs), resulting in transcript degradation or translational repression  (3,4). According to the competing endogenous RNA (ceRNA) theory, proposed in 2011, various transcripts including lncRNAs, circRNAs, pseudogenes, and mRNAs can act as miRNA sponges by competing for shared miRNAs through common MREs, thereby influencing each other’s expression levels (5,6). Some types of cancer, such as the stomach, liver, breast, and lung, are only a few of the cancers that are affected by ceRNAs (5). 
Globally, Gastric Cancer (GC) is a prevalent cancer and a significant cancer-related mortality all over the world (5). LncRNAs, circRNAs, and pseudogenes, like ceRNAs, have been revealed to play a key role in biological processes like stomach cancer proliferation, differentiation, and drug resistance. Therefore, it is anticipated that more research on the ceRNA network in GC will offer fresh perspectives on how the disease develops and arises, as well as pave the right path for identifying novel therapeutic targets (5).

Gastric cancer (GC)
GC is the third leading cause of cancer fatality all over the world. It’s a malignancy that emanates from the mucosal epithelium of the stomach (7,8). Increase in age, excessive salt consumption, lack of fruit and vegetable consumption, and Helicobacter pylori infection are all risk factors for stomach malignancy. Additionally recognized risk factors include drinking alcohol and actively smoking (9). Clinically, few patients with GC stages exhibit overt symptoms, and those who do, often struggle to get enough attention because of symptoms like nausea, vomiting, or upper gastrointestinal symptoms that resemble ulcers. Therefore, the majority of patients suffering from GC are diagnosed at advanced stages (5,7). 
The prognosis and diagnosis of cancers are determined by the stages of the tumor and disease. Since primary GC has vague symptoms, the majority of sick persons only receive an advanced diagnosis. Advanced computed tomography and endoscopic biopsy are the gold standard for diagnosing GC. New clinical biomarkers are required for early tumor diagnosis, monitoring of therapy response, and prognosis because early detection of tumor and diagnosis are crucial to lowering GC-related mortality (5,8). 
Chemotherapy combined with operation is still the first-line cure for GC. Drug resistance in chemotherapy is a significant matter that needs to be addressed despite progression in surgical procedures, radiotherapy, and chemotherapy treatment (10). This is since the tumoral cells will develop a mechanism to neutralize the impact of drugs in chemotherapy, which will finally result in more clones, increased aggression, and a weak prognosis (10).  Resistance to chemotherapy may be inherited or acquisitive, and it is a complex phenomenon containing DNA damage responses, acquired mutations, and the dysregulation of important signaling pathways (10). 
Therefore, a research concentration has always been on examining the pathophysiology and searching for important components to direct diagnosis and treatment. The onset, progression, and pathophysiology of GC are multi-stage and multi-factor processes. According to recent studies, it frequently occurs in association with aberrant transcription. This anomaly involves faults in the regulatory capacity of the genome’s ncRNAs, in addition to aberrant protein-coding RNA (mRNA) levels (11). Based on many studies, one of the primary causes of cancer therapy failure is the Cancer Stem Cell (CSC). Stem cell preservation depends heavily on the expression of miRNAs. The start and development of gastric cancer are directly correlated with the dysregulation of miRNAs in Gastric Cancer Stem Cells (GCSCs) (11).

Competing endogenous RNA (CeRNA)
Salmana et al first presented the concept of ceRNA in 2011 and explained that there was another mode of gene expression regulation called RNA-miRNA-mRNA in addition to the standard mode of miRNA-RNA (11-13). In this context, the term “ceRNA” refers to a regulatory mechanism rather than a specific RNA (11-13). According to the ceRNA hypothesis, transcripts such as lncRNAs, circRNAs, pseudogenes, and mRNAs can regulate each other by competing for shared miRNA Response Elements (MREs) through miRNA binding (Figure 1) (14,15). This competitive binding is also referred to as miRNA sponge activity (14,15). Any RNA molecules that share MREs may act as a ceRNA. The most important part of the ceRNA network is miRNA, and its other components include lncRNAs, mRNAs, and pseudogenes (7). Also, lncRNAs, circRNAs, and pseudogenes have dual functions  concerning development of tumors in an organ such as the stomach, meaning they can cause tumors as well as prevent their progression (16). miRNAs will be mature when a series of processing stages occur sequentially in the nucleus and cytoplasm; then, mature miRNAs combine with Argonaute (Ago) family proteins to make the RNA-Induced Silencing Complex (RISC) (16). The location component of target transcripts which are known as MREs is the complement of the miRNA sequences; miRNAs detect them particularly and conduct the RISC toward target transcripts (16).
Competitive mechanisms of endogenous RNA include two states: a) where ceRNA is silent, i.e., a pseudogene remains transcriptionally silent and b)  in which ceRNA is active when the pseudogene is transcriptionally activated with competing target sites. In the first case, mRNA after transcription is transported to the cytoplasm, where it is targeted by the miRNA-mediated silencing complex (miRNA-RISC). As a result, translation is blocked, mRNAs are rapidly degraded, and gene expression is reduced (15). In the second case, there will be competition for miRNA targeting and binding to the RISC complex, reducing miRNA inhibition. The miRNA-RISC complex dissociates from the gene, leading to increased gene expression (15).
Despite abundant studies on the effects of ceRNA networks in cancer, some limitations remained in ceRNA theory. First, genes interactions in ceRNA networks were predicted by bioinformatics studies and should be verified by some experimental studies. Second, because of compete in target pool of the miRNA, optimal concentration of ceRNA activity that is computed by mathematical models, might not be achieved in experimental studies (17,18).   

LncRNAs
LncRNAs are a type of RNA molecule that have over 200 nucleotides, but do not encode proteins. The largest type of ncRNAs is lncRNAs that are sorted in subclasses based on various characteristics, the most widespread of which are pseudogenes, long intergenic ncRNA (lincRNA), antisense RNA (asRNA), and circular RNA (circRNA) (3). LncRNAs were formerly assumed to be side products of RNA polymerase II transcription that have no biological role (19). Although LncRNAs were once assumed to have  no biological role, but recent researches have revealed that they are important regulators in cancer progression (8,19). LncRNAs have been discovered in the nucleus and cytoplasm that are mostly involved in epigenetic, transcriptional, and post-transcriptional regulation, respectively (19,20). Anomalous alterations in the expression of lncRNAs have been discovered in nearly all kinds of cancers, demonstrating their significant functions in the expansion and cancer progression (19). LncRNAs play a diversity of biological functions through interaction with proteins, DNA, and RNAs (19). Cell proliferation, metastasis, metabolism, and apoptosis can all be impacted by unusually produced lncRNAs, that play a role as a ceRNA to regulate miRNAs (8). When lncRNAs act as endogenous miRNA sponges, they compete with mRNAs for the binding of MREs to miRNAs, thus regulating the expression of target gene transcripts (5,8). There are some LncRNAs such as Xist, H19, HOTAIR, and MALAT1 that function as competitive platforms for both miRNAs and mRNAs (Table 1) (14).

Table 1. The function of LncRNA as ceRNAs in gastric cancer

LncRNA

MiRNA

Gene

Biological Functions

Ref

CNALPTC1

miR-6788-5p

PAK1

Invasion, proliferation, migration

(60)

LINC00205

miR-26a

HMGA2, EZH2, and

USP15

Cell proliferation, migration, invasion

(61)

LINC00922

miR-204-5p

HMGA2

Cell proliferation, Apoptosis, migration, invasion

(62)

FAM225A

miR-206

ADAM12

Cell viability, migration, invasion

(63)

NKX2-1-AS1

miR-145-5p

SERPINE1

Angiogenesis

(64)

lncSLCO1C1

miR-211-5p, miR-204-5p

SSRP1

Cell proliferation, Apoptosis, migration

(65)

Loc100506691

miR-26a-5p, miR-330-5p

CHAC1

Cell growth

(66)

lncRNA X-inactive specific transcript (lncRNA Xist) 
There is a long noncoding RNA called lncRNA Xist (lncRNA X-inactive specific transcript) on the X chromosome that is 17 kb and takes part in cell growth and proliferation (21). Xist has also a function as a ceRNA, by sponging different miRNAs from various protein-coding genes that participate in the development of tumor and other human illnesses (21). According to some researches, Xist is inappropriately expressed  in GC and exerted its function as a ceRNA in the progression of GC (5,21). Current studies have illustrated that the Xist acts as a miRNA sponge, working on several miRNAs like miR-101, miR-497, miR-185, miR-132, miR-let-7b, and miR-337 to promote GC  (21). Among these interactions, the XIST/miR101/EZH2 axis has been particularly well characterized (3). EZH2 overexpression has been associated with tumor proliferation, invasion, and metastasis in gastric cancer (22,23). In GC tissues and cell lines, Xist is significantly up-regulated, while miR101 is down-regulated, showing a negative correlation between them. Xist acts as a molecular sponge for miR101, preventing it from inhibiting EZH2 expression (24). As a result, EZH2 levels increase, promoting malignant behaviors (22,23). Knockdown of Xist has been shown to suppress GC cell proliferation and invasion in vitro, and reduce tumor growth and metastasis in vivo, via downregulation of EZH2 mediated by miR101. These findings underscore the oncogenic role of the Xist/miR101/EZH2 regulatory loop, and its potential as a therapeutic target in gastric cancer (24). 
Some researches indicated a negative correlation between Xist expression and  miR-185, miR-101, and miR-let-7b (21). Xist can also  act as a ceRNA to participate in the development of GC through different miRNA/gene axes, such as miR-185/TGF-β1, miR-497/MACC1,  miR-101/EZH2,  miR- 337/JAK2, and 132/PXN axises (25-29). 

H19-imprinted maternally-expressed trans-cript   (lncRNA H19) 
lncRNA H19 is located on human chromosome 11p15 and is close to the IGF2 gene (5,30). H19 is inherited only from the maternal allel (5,30). During development and postnatal growth, it is highly expressed, but it is generally inhibited during adulthood (31). It is also known that the tumor suppressor p53 epigenetically inhibits H19 production (3). H19 dysregulation led to enhanced cell proliferation and partial p53 inactivation (1). H19 is a vital component in the emergence and advancement of cancer. It functions as a tumor suppressor gene in some cancers, while acting as an oncogene in others to mediate carcinogenesis (32,33). There is evidence that H19, in its RNA role, can deceive miRNA and enhance tumorigenesis (3). LncRNA H19 may  be utilized as a ceRNA to  take a part in the  GC  progression via  different miRNA/gene axes, such as miR-let-7c/HER2, miR-22-3p/Snail1, miR-138/E2F2, miR-675/FADD, miR-675/ RUNX1, and miR-141/ZEB1 (34-39).
MiR-let-7c is an example of a negative correlation with the expression of H19, which acts as a tumor suppressor. When H19 is turned off,  HER2 expression is inhibited, so it can compete as ceRNA in GC (35). There is a positive corralation between H19 expression and miR-675 expression, which increases the occurrence and spread of GC via FADD/Caspase 8/Caspase 3 signaling pathway (34).

HOX transcript antisense intergenic RNA (lncRNA HOTAIR)
LncRNA HOTAIR was discovered in 2007 and called HOX antisense intergenic RNA (40). LncRNA HOTAIR is located on chromosome 12, which contains 2,158 nucleotides (41). HOX is an oncogene and has been reported to inhibit apoptosis and promote metastasis (1,41). HOX, as a member of ceRNA network, can promote carcinogenesis and progression of GC and affect the following axes: miR-126/VEGFA, miR-34a/PI3K/Akt, miR-34a/Wnt/β-catenin, miR-217/GPC5 and PTPN14, miR-17-5p/PTEN, miR-454-3p/STAT3, miR-126/CXCR4, miR-618/KLF12, miR-1277-5p/COL5A1, miR-148b/PCDH10, and miRNA-206/CCND1/CCND2 (31,42-50). In particular, the HOTAIR/miR-34a axis has been shown to play a crucial role in chemoresistance in gastric cancer. HOTAIR is overexpressed in GC and suppresses miR-34a, a known tumor suppressor (51). This suppression activates the PI3K/Akt and Wnt/β-catenin signaling pathways, both of which are involved in promoting cell proliferation, survival, and drug resistance. The PI3K/Akt pathway is essential for transmitting survival signals that protect cancer cells from apoptosis, while the Wnt/β-catenin pathway contributes to tumor growth and metastasis (52,53). Knockdown of HOTAIR leads to the upregulation of miR-34a, which in turn downregulates these signaling pathways, thereby reducing cisplatin resistance in GC cells. These findings indicate that HOTAIR may contribute to chemotherapy resistance through its regulatory effects on miR-34a and downstream oncogenic pathways (51).

Metastasis-associated lung-adenocarcinoma transcript 1 (MALAT1)
MALAT1 is  located on chromosome 11q13, which plays an important role in tumor  growth,  metastasis, apoptosis, epigenetic regulation, and cell signal transduction; it also acts as a ceRNA in GC (54-58). According to various studies, MALAT1 interacts as a competitive endogenous RNA (ceRNA) with the microRNA/gene axis, such as miR-202/Gli2, miR-1297/HMGB2, miR-23b-3/ATG12, miR-30b/ATG5, miR-125a/IL-21R, miR-181a-5p/AKT3, miR-204/LC3B, miR-204/TRPM3, miR-22-3p/ErbB3, miR-22-3p/ZFP91, and miR-124-3p/EZH2 (55-63).  

CircRNAs as ceRNAs in GC
Single-stranded and closed RNAs (circRNAs) were first discovered in viroids, which are plant pathogens. CircRNAs lack the polyadenylic acid (poly A) tail structure at 3’ and the cap structure at 5’ (5, 64). CircRNAs exist in a variety of cells and have characteristics like stability and sequence conservation (65). It is known that they play roles in various biological processes, particularly cell cycle control and extracellular junctions (66). CircRNAs can be divided into four categories: tRNA intronic circRNAs (tricRNAs), exon-intron RNAs (EIciRNAs), circular intronic RNAs (ciRNAs), and Exonic circRNAs (ecircRNA) (67). There is increasing evidence that the dysregulation of circRNAs causes human disease, especially many types of cancer (66,67). There is evidence that circular RNAs play a role as ceRNAs in gastric cancer (Table 2) (5). In 2019, scientists detected  a negative correlation between circCOL6A3 and miR-3064-5p (68). Overexpression of circCOL6A3 increases cell motility and apoptosis of GC cells (68). Patients with GC have a dismal prognosis for survival when circPDZD8 is significantly overexpressed (69). GC cells may not proliferate and migrate to other tissues as much if CircPDZD8 is knocked down (69). It was found that the expression of circPDZD8 was negatively correlated with MiR-197-5p and positively correlated with the CHD9 gene (69). In 2021, it was reported by Tang Zhou et al that circ_0081143 could regulate miR-497-5p through its ceRNA activity of the miR-497-5p/EGFR axis. It is at least partially involved in improving migration and EMT caused by hypoxia in GC cells, and knockdown of circle 0081143 is mediated by miR-497-5 (70). 

Pseudogenes
The pseudogenes are common in the human genome (approximately 11,000 pseudogenes); however, as previously thought, they are undesirable genes, known as “genomic fossils” (71-73). 
Based on recent studies, pseudogenes take a significant regulatory role in a number of human diseases (71-73). Although pseudogenes do not encode functional proteins due to deleterious perturbations such as premature termination, deletions, insertions, or even mutations in their Open Reading Frames (ORFs), they take a major role in post-transcriptional regulation (71-73). These genes can act as miRNA sponges due to having an MRE similar to their original genes (70). Furthermore, pseudogenes can control gene expression by interacting with RNA-binding proteins (5). Pseudogenes can participate in the ceRNA regulatory network in the regulation of transcription of genes (5).  POU5F1B is an example of pseudogenes that play a role in gastric cancer. Its overexpression not only causes cell proliferation and tumor growth, but also inhibits apoptosis (73). 
One of the SUMO  pseudogenes is SUMO1P3 (SUMO small ubiquitin-like modifier 1 pseudogene 3), which induces lncRNA expression (73). According to a report by Mei et al, SUMO1P3 is upregulated in GC. Upregulation of SUMO1P3 is significantly related to various factors, including age, tumor size, and invasiveness. In addition, overexpression of  SUMO1P3 may be used for the diagnosis of  GC as a biomarker (73).
OCT4 is a self-renewal gene in stem cells and is also called as POU5F1. OCT4 is expressed in different cancer cell lines and embryonic stem cells as well as preliminary tumors (74). Based on some studies, OCT4 pseudogenes are expressed differently in various  types of cell lines. POU5F1B, which is also called OCT4-pg1, has many homologs with OCT4 pseudogenes (74).
POU5F1B  is situated on chromosome  8q24.21. This region is enhanced in different cancers. POU5F1B overexpression in GC cell lines has been illustrated by Pan et al (74). They showed that overexpression of POU5F1B not only causes tumorigenesis and cell proliferation, but also inhibits apoptosis. The POU5F1B pseudogene, by producing an active protein, can cause tumor development and is also considered as a prognostic factor in patients with advanced GC (73).
PTENP1 is situated on chromosome 9p13.3 and was the first ceRNA found in cancer cells of humans and causes tumor suppression (73,75). The PTENP1 pseudogene and its ancestral gene, PTEN, have a highly conserved  3′UTR, and this pseudogene is regulated by miR-106b and miR-93 in GC cells (76).

Table 2. The function of circRNAs as ceRNAs in gastric cancer

Circular

MiRNA

Gene

Biological functions

Ref

CircCOL6A3

miR-3064-5p

COL6A3

Proliferation, migration, apoptosis

(71)

CircPDZD8

miR-197-5p

CHD9

Proliferation, migration

(72)

Circ_0081143

miR-497-5p

EGFR

Migration, invasion, EMT

(73)

Circ_0001789

miR-140-3p

PAK2

Cell migration, invasion and epithelial-mesenchymal transition

(74)

Circ0007360

miR-762

IRF7

Cell proliferation, migration

(75)

Circ_0001013,

miR-136

TWSG1

Migration, invasion, apoptosis, cell cycle

(76)

CircKIF4A

miR-144-3p

EZH2

Proliferation, migration, invasion, EMT

(77)

Hsa_circ_0044301

Hsa-miR-188-5p

DAXX

Proliferation, migration, invasion

(78)

Circ-0007707

miR-429

PDGFD

Tumor Microenvironment, Immune infiltration

(79)

CircRNA-0000081

hsa-miR-423-5p

 PDPK1

Proliferation, migration, invasion

(80)

Conclusion
In summary, few studies have been done on the role of ceRNA in the diagnosis and treatment of GC. In this study, the role of non-coding RNAs (ncRNAs), including microRNA, long non-coding RNAs (lncRNAs), circular RNAs (circRNAs), and pseudogenes as a network of competing internal RNAs in regulating gene expression at the transcriptional level in GC, were presented. Non-coding RNAs, as ceRNAs, are involved in various biological processes, such as cell proliferation, apoptosis, invasion, and migration. 
CeRNAs networks play a significant regulatory role in the progression of GC, and in the ceRNAs networks, ncRNAs competitively target miRNAs and play a role in the regulation of gastric cancer-related genes. Altogether, the study of the ceRNA network in GC can improve our knowledge on the disease development and progression, molecular signaling, prognosis, and diagnosis, as well as for identifying new therapeutic strategies for treating GC patients.

Funding sources
No funding.

Acknowledgement 
With thanks to the Gastroenterohepatology Research Center of Shiraz University of Medical Sciences for their support. The authors would like to thank Shiraz University of Medical Sciences, Shiraz, Iran, and also Center for Development of Clinical Research of Nemazee Hospital and Dr. Nasrin Shokrpour for editorial assistance.

Conflict of Interest
The authors declare that they have no conflicts of interest.

1. Zhang M, Du X. Noncoding RNAs in gastric cancer: Research progress and prospects. World J Gastroenterol 2016;22(29):6610. https://pubmed.ncbi.nlm.nih.gov/27547004/
2. Qin T, Li J, Zhang KQ. Structure, Regulation, and Function of Linear and Circular Long Non-Coding RNAs. Front Genet 2020;11:150. https://pubmed.ncbi.nlm.nih.gov/32194627/
3. Chan JJ, Tay Y. Noncoding RNA: RNA Regulatory Networks in Cancer. Int J Mol Sci 2018;19(5). https://pubmed.ncbi.nlm.nih.gov/29702599/
4. Wang Y, Hou J, He D, Sun M, Zhang P, Yu Y, et al. The emerging function and mechanism of ceRNAs in cancer. Trends Genet 2016;32(4):211-24. https://pubmed.ncbi.nlm.nih.gov/26922301/
5. Ye J, Li J, Zhao P. Roles of ncRNAs as ceRNAs in Gastric Cancer. Genes (Basel) 2021;12(7):1036. https://pubmed.ncbi.nlm.nih.gov/34356052/
6. Liu Q, Zhang W, Wu Z, Liu H, Hu H, Shi H, et al. Construction of a circular RNA-microRNA-messengerRNA regulatory network in stomach adenocarcinoma. J Cell Biochem 2020;121(2):1317-31. https://pubmed.ncbi.nlm.nih.gov/31486138/
7. Zhang S, Li S, Guo JL, Li N, Zhang CN, Liu J. Integrated Analysis of lncRNA-Associated ceRNA Network Identifies Two lncRNA Signatures as a Prognostic Biomarker in Gastric Cancer. Dis Markers 2021;2021:8886897. https://pubmed.ncbi.nlm.nih.gov/34603561/
8. Wang S, Li XC, Zhu JR, Ma ZJ, Ran JT, Zhou YN. Construction of a novel ceRNA network and identification of lncRNA ADAMTS9-AS2 and PVT1 as hub regulators of miRNA and coding gene expression in gastric cancer. Transl Cancer Res 2021;10(2):938-52. https://pubmed.ncbi.nlm.nih.gov/35116422/
9. Bray F, Ferlay J, Soerjomataram I, Siegel RL, Torre LA, Jemal A. Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J Clin 2018;68(6):394-424. https://pubmed.ncbi.nlm.nih.gov/30207593/
10. Tan Z. Recent Advances in the Surgical Treatment of Advanced Gastric Cancer: A Review. Med Sci Monit 2019;25:3537-41. https://pubmed.ncbi.nlm.nih.gov/31080234/
11. Salmena L, Poliseno L, Tay Y, Kats L, Pandolfi PP. A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language? Cell 2011;146(3):353-8. https://pubmed.ncbi.nlm.nih.gov/21802130/
12. Arvey A, Larsson E, Sander C, Leslie CS, Marks DS. Target mRNA abundance dilutes microRNA and siRNA activity. Mol Syst Biol 2010;6:363. https://pubmed.ncbi.nlm.nih.gov/20404830/
13. Ebert MS, Sharp PA. Emerging roles for natural microRNA sponges. Curr Biol 2010;20(19):R858-61. https://pubmed.ncbi.nlm.nih.gov/20937476/
14. Tay Y, Rinn J, Pandolfi PP. The multilayered complexity of ceRNA crosstalk and competition. Nature 2014;505(7483):344-52. https://pubmed.ncbi.nlm.nih.gov/24429633/
15. Thomson DW, Dinger ME. Endogenous microRNA sponges: evidence and controversy. Nat Rev Genet 2016;17(5):272-83. https://pubmed.ncbi.nlm.nih.gov/27040487/
16. Li C, Li X, Jiang Z, Wang D, Sun L, Li J, et al. Flavonoids Inhibit Cancer by Regulating the Competing Endogenous RNA Network. Front Oncol 2022;12:842790. https://pubmed.ncbi.nlm.nih.gov/35371996/
17. Qi X, Zhang DH, Wu N, Xiao JH, Wang X, Ma W. ceRNA in cancer: possible functions and clinical implications.  J Med Genet 2015;52(10):710-8. https://pubmed.ncbi.nlm.nih.gov/26358722/
18. Bian W, Jiang XX, Wang Z, Zhu YR, Zhang H, Li X, et al. Comprehensive analysis of the ceRNA network in coronary artery disease. Sci Rep 2021;11(1):24279. https://pubmed.ncbi.nlm.nih.gov/34930980/
19. Gao N, Li Y, Li J, Gao Z, Yang Z, Li Y, et al. Long non-coding RNAs: the regulatory mechanisms, research strategies, and future directions in cancers. Front Oncol 2020;10:598817. https://pubmed.ncbi.nlm.nih.gov/33392092/
20. Szafranski P, Stankiewicz P. Long Non-Coding RNA FENDRR: Gene Structure, Expression, and Biological Relevance. Genes (Basel) 2021;12(2):177. https://pubmed.ncbi.nlm.nih.gov/33513839/
21. Wang W, Min L, Qiu X, Wu X, Liu C, Ma J, et al. Biological Function of Long Non-coding RNA (LncRNA) Xist. Front Cell Dev Biol 2021;9:645647. https://pubmed.ncbi.nlm.nih.gov/34178980/
22. Yu W, Liu N, Song X, Chen L, Wang M, Xiao G, et al. EZH2: an accomplice of gastric cancer. Cancers (Basel) 2023;15(2):425. https://pubmed.ncbi.nlm.nih.gov/36672374/
23. Hjazi A, Hussn A, Kareem A, Alshahrani MY, Malathi H, Nayak PP, et al. EZH2 in Digestive System Cancers: Epigenetic Regulation, Oncogenic Interactions, and Therapeutic Potential. Exp Cell Res 2025:114648. https://pubmed.ncbi.nlm.nih.gov/40499609/
24. Chen DL, Ju HQ, Lu YX, Chen LZ, Zeng ZL, Zhang DS, et al. Long non-coding RNA XIST regulates gastric cancer progression by acting as a molecular sponge of miR-101 to modulate EZH2 expression. J Exp Clin Cancer Res 2016;35(1):142. https://pubmed.ncbi.nlm.nih.gov/27620004/
25. Ma L, Zhou Y, Luo X, Gao H, Deng X, Jiang Y. Long non-coding RNA XIST promotes cell growth and invasion through regulating miR-497/MACC1 axis in gastric cancer. Oncotarget 2017;8(3):4125-35. https://pubmed.ncbi.nlm.nih.gov/27911852/
26. Zhang Q, Chen B, Liu P, Yang J. XIST promotes gastric cancer (GC) progression through TGF-β1 via targeting miR-185. J Cell Biochem 2018;119(3):2787-96. https://pubmed.ncbi.nlm.nih.gov/29053187/
27. Zheng W, Li J, Zhou X, Cui L, Wang Y. The lncRNA XIST promotes proliferation, migration and invasion of gastric cancer cells by targeting miR-337. Arab J Gastroenterol 2020;21(3):199-206. https://pubmed.ncbi.nlm.nih.gov/32830093/
28. Li P, Wang L, Li P, Hu F, Cao Y, Tang D, et al. Silencing lncRNA XIST exhibits antiproliferative and proapoptotic effects on gastric cancer cells by up-regulating microRNA-132 and down-regulating PXN. Aging (Albany NY) 2020 Nov 5;13(10):14469-14481. doi: 10.18632/aging.103635. Epub 2020 Nov 5. Retraction in: Aging (Albany NY) 2024 Mar 15;16(5):4946-4947. https://pubmed.ncbi.nlm.nih.gov/33154189/
29. Han X, Zhang HB, Li XD, Wang ZA. Long non-coding RNA X-inactive-specific transcript contributes to cisplatin resistance in gastric cancer by sponging miR-let-7b. Anticancer Drugs 2020;31(10):1018-25. https://pubmed.ncbi.nlm.nih.gov/33009035/
30. Brannan CI, Dees EC, Ingram RS, Tilghman SM. The product of the H19 gene may function as an RNA. Mol Cell Biol 1990;10(1):28-36. https://pubmed.ncbi.nlm.nih.gov/1688465/
31. Wei Z, Chen L, Meng L, Han W, Huang L, Xu A. LncRNA HOTAIR promotes the growth and metastasis of gastric cancer by sponging miR-1277-5p and upregulating COL5A1. Gastric Cancer 2020;23(6):1018-32. https://pubmed.ncbi.nlm.nih.gov/32583079/
32. Rezaei O, Tamizkar KH, Sharifi G, Taheri M, Ghafouri-Fard S. Emerging Role of Long Non-Coding RNAs in the Pathobiology of Glioblastoma. Front Oncol 2020;10:625884. https://pubmed.ncbi.nlm.nih.gov/33634032/
33. Zhang W, Zhou K, Zhang X, Wu C, Deng D, Yao Z. Roles of the H19/microRNA‑675 axis in the proliferation and epithelial‑mesenchymal transition of human cutaneous squamous cell carcinoma cells. Oncol Rep 2021;45(4):39. https://pubmed.ncbi.nlm.nih.gov/33649811/
34. Yan J, Zhang Y, She Q, Li X, Peng L, Wang X, et al. Long Noncoding RNA H19/miR-675 Axis Promotes Gastric Cancer via FADD/Caspase 8/Caspase 3 Signaling Pathway. Cell Physiol Biochem 2017;42(6):2364-76. https://pubmed.ncbi.nlm.nih.gov/28848149/
35. Wei Y, Liu Z, Fang J. H19 functions as a competing endogenous RNA to regulate human epidermal growth factor receptor expression by sequestering let‑7c in gastric cancer. Mol Med Rep 2018;17(2):2600-6. https://pubmed.ncbi.nlm.nih.gov/29207111/
36. Gan L, Lv L, Liao S. Long non‑coding RNA H19 regulates cell growth and metastasis via the miR‑22‑3p/Snail1 axis in gastric cancer. Int J Oncol 2019;54(6):2157-68. https://pubmed.ncbi.nlm.nih.gov/31081061/
37. Yu J, Fang C, Zhang Z, Zhang G, Shi L, Qian J, et al. H19 Rises in Gastric Cancer and Exerts a Tumor-Promoting Function via miR-138/E2F2 Axis. Cancer Manag Res 2020;12:13033-42. https://pubmed.ncbi.nlm.nih.gov/33376397/
38. Liu G, Xiang T, Wu QF, Wang WX. Long Noncoding RNA H19-Derived miR-675 Enhances Proliferation and Invasion via RUNX1 in Gastric Cancer Cells. Oncol Res 2016;23(3):99-107. https://pubmed.ncbi.nlm.nih.gov/26931432/
39. Zhou X, Ye F, Yin C, Zhuang Y, Yue G, Zhang G. The Interaction Between MiR-141 and lncRNA-H19 in Regulating Cell Proliferation and Migration in Gastric Cancer. Cell Physiol Biochem 2015;36(4):1440-52. https://pubmed.ncbi.nlm.nih.gov/26160158/
40. Wu Y, Zhang L, Wang Y, Li H, Ren X, Wei F, et al. Long noncoding RNA HOTAIR involvement in cancer. Tumour Biol 2014;35(10):9531-8. https://pubmed.ncbi.nlm.nih.gov/25168368/
41. Hajjari M, Salavaty A. HOTAIR: an oncogenic long non-coding RNA in different cancers. Cancer Biol Med 2015;12(1):1-9. https://pubmed.ncbi.nlm.nih.gov/25859406/
42. Yan J, Dang Y, Liu S, Zhang Y, Zhang G. LncRNA HOTAIR promotes cisplatin resistance in gastric cancer by targeting miR-126 to activate the PI3K/AKT/MRP1 genes. Tumour Biol 2016 Dec;37:16345–16355. https://pubmed.ncbi.nlm.nih.gov/27900563/
43. Cheng C, Qin Y, Zhi Q, Wang J, Qin C. Knockdown of long non-coding RNA HOTAIR inhibits cisplatin resistance of gastric cancer cells through inhibiting the PI3K/Akt and Wnt/β-catenin signaling pathways by up-regulating miR-34a. Int J Biol Macromol 2018;107(Pt B):2620-9. https://pubmed.ncbi.nlm.nih.gov/29080815/
44. Wang H, Qin R, Guan A, Yao Y, Huang Y, Jia H, et al. HOTAIR enhanced paclitaxel and doxorubicin resistance in gastric cancer cells partly through inhibiting miR-217 expression. J Cell Biochem 2018;119(9):7226-34. https://pubmed.ncbi.nlm.nih.gov/29856087/
45. Jia J, Zhan D, Li J, Li Z, Li H, Qian J. The contrary functions of lncRNA HOTAIR/miR-17-5p/PTEN axis and Shenqifuzheng injection on chemosensitivity of gastric cancer cells. J Cell Mol Med 2019;23(1):656-69. https://pubmed.ncbi.nlm.nih.gov/30338929/
46. Jiang D, Li H, Xiang H, Gao M, Yin C, Wang H, et al. Long Chain Non-Coding RNA (lncRNA) HOTAIR Knockdown Increases miR-454-3p to Suppress Gastric Cancer Growth by Targeting STAT3/Cyclin D1. Med Sci Monit 2019 Feb 27;25:1537-1548. doi: 10.12659/MSM.913087. Retraction in: Med Sci Monit 2023 Jan 11;29:e939464. https://pubmed.ncbi.nlm.nih.gov/30810117/
47. Xiao J, Lai H, Wei SH, Ye ZS, Gong FS, Chen LC. lncRNA HOTAIR promotes gastric cancer proliferation and metastasis via targeting miR-126 to active CXCR4 and RhoA signaling pathway. Cancer Med 2019 Nov;8(15):6768-6779. Retraction in: Cancer Med 2024 May;13(9):e7220. Erratum in: Cancer Med 2021 Dec;10(23):8720-8721. https://pubmed.ncbi.nlm.nih.gov/31517442/
48. Xun J, Wang C, Yao J, Gao B, Zhang L. Long Non-Coding RNA HOTAIR Modulates KLF12 to Regulate Gastric Cancer Progression via PI3K/ATK Signaling Pathway by Sponging miR-618. Onco Targets Ther 2019;12:10323-34. https://pubmed.ncbi.nlm.nih.gov/31819516/
49. Seo SI, Yoon JH, Byun HJ, Lee SK. HOTAIR Induces Methylation of PCDH10, a Tumor Suppressor Gene, by Regulating DNMT1 and Sponging with miR-148b in Gastric Adenocarcinoma. Yonsei Med J 2021;62(2):118-28.
50. Chao P, Yongheng F, Jin Z, Yu Z, Shiyong Y, Kunxing Y, et al. lncRNA HOTAIR knockdown suppresses gastric cancer cell biological activities. Food Sci Nutr 2021;9(1):123-34. https://pubmed.ncbi.nlm.nih.gov/33473276/
51. Cheng C, Qin Y, Zhi Q, Wang J, Qin C. Knockdown of long non-coding RNA HOTAIR inhibits cisplatin resistance of gastric cancer cells through inhibiting the PI3K/Akt and Wnt/β-catenin signaling pathways by up-regulating miR-34a. Int J Biol Macromol 2018;107:2620-9. https://pubmed.ncbi.nlm.nih.gov/29080815/
52. Nazari M, Babakhanzadeh E, Mollazadeh A, Ahmadzade M, Mohammadi Soleimani E, Hajimaqsoudi E. HOTAIR in cancer: Diagnostic, prognostic, and therapeutic perspectives. Cancer Cell Int 2024;24(1):415. https://pubmed.ncbi.nlm.nih.gov/39702144/
53. Tang Q, Hann SS. HOTAIR: an oncogenic long non-coding RNA in human cancer. Cell Physiol Biochem 2018;47(3):893-913. https://pubmed.ncbi.nlm.nih.gov/29843138/
54. Uthman YA, Ibrahim KG, Abubakar B, Bello MB, Malami I, Imam MU, et al. MALAT1: A Promising Therapeutic Target for the Treatment of Metastatic Colorectal Cancer. Biochem Pharmacol 2021;190:114657. https://pubmed.ncbi.nlm.nih.gov/34144008/
55. Zhang Y, Chen Z, Li MJ, Guo HY, Jing NC. Long non-coding RNA metastasis-associated lung adenocarcinoma transcript 1 regulates the expression of Gli2 by miR-202 to strengthen gastric cancer progression. Biomed Pharmacother 2017;85:264-71. https://pubmed.ncbi.nlm.nih.gov/27887846/
56. Li J, Gao J, Tian W, Li Y, Zhang J. Long non-coding RNA MALAT1 drives gastric cancer progression by regulating HMGB2 modulating the miR-1297. Cancer Cell Int 2017;17:44. https://pubmed.ncbi.nlm.nih.gov/28396617/
57. YiRen H, YingCong Y, Sunwu Y, Keqin L, Xiaochun T, Senrui C, et al. Long noncoding RNA MALAT1 regulates autophagy associated chemoresistance via miR-23b-3p sequestration in gastric cancer. Mol Cancer 2017;16(1):174. https://pubmed.ncbi.nlm.nih.gov/29162158/
58. Xi Z, Si J, Nan J. LncRNA MALAT1 potentiates autophagy‑associated cisplatin resistance by regulating the microRNA‑30b/autophagy‑related gene 5 axis in gastric cancer. Int J Oncol 2019;54(1):239-48. https://pubmed.ncbi.nlm.nih.gov/30365113/
59. Yan L, Zhang J, Guo D, Ma J, Shui SF, Han XW. IL-21R functions as an oncogenic factor and is regulated by the lncRNA MALAT1/miR-125a-3p axis in gastric cancer. Int J Oncol 2019;54(1):7-16. https://pubmed.ncbi.nlm.nih.gov/30387833/
60. Lu Z, Luo T, Pang T, Du Z, Yin X, Cui H, et al. MALAT1 promotes gastric adenocarcinoma through the MALAT1/miR-181a-5p/AKT3 axis. Open Biol 2019 Sep 27;9(9):190095. Epub 2019 Sep 4. Retraction in: Open Biol 2023 Nov;13(11):230404. https://pubmed.ncbi.nlm.nih.gov/31480991/
61. Shao G, Zhao Z, Zhao W, Hu G, Zhang L, Li W, et al. Long non-coding RNA MALAT1 activates autophagy and promotes cell proliferation by downregulating microRNA-204 expression in gastric cancer. Oncol Lett 2020;19(1):805-12. https://pubmed.ncbi.nlm.nih.gov/31897197/
62. Li X, Zhao J, Zhang H, Cai J. Silencing of LncRNA Metastasis-Associated Lung Adenocarcinoma Transcript 1 Inhibits the Proliferation and Promotes the Apoptosis of Gastric Cancer Cells Through Regulating microRNA-22-3p-Mediated ErbB3. Onco Targets Ther 2020;13:559-71. https://pubmed.ncbi.nlm.nih.gov/32021298/
63. Zhu B, Cui H, Xu W. Hydrogen inhibits the proliferation and migration of gastric cancer cells by modulating lncRNA MALAT1/miR-124-3p/EZH2 axis. Cancer Cell Int 2021;21(1):70. https://pubmed.ncbi.nlm.nih.gov/33482814/
64. Zhou WY, Cai ZR, Liu J, Wang DS, Ju HQ, Xu RH. Circular RNA: metabolism, functions and interactions with proteins. Mol Cancer 2020;19(1):172. https://pubmed.ncbi.nlm.nih.gov/33317550/
65. Zhong Y, Du Y, Yang X, Mo Y, Fan C, Xiong F, et al. Circular RNAs function as ceRNAs to regulate and control human cancer progression. Mol Cancer 2018;17(1):79. https://pubmed.ncbi.nlm.nih.gov/29626935/
66. Rahmati Y, Asemani Y, Aghamiri S, Ezzatifar F, Najafi S. CiRS-7/CDR1as; An oncogenic circular RNA as a potential cancer biomarker. Pathol Res Pract 2021;227:153639. https://pubmed.ncbi.nlm.nih.gov/34649055/
67. Tang X, Ren H, Guo M, Qian J, Yang Y, Gu C. Review on circular RNAs and new insights into their roles in cancer. Comput Struct Biotechnol J 2021;19:910-28. https://pubmed.ncbi.nlm.nih.gov/33598105/
68. Sun X, Zhang X, Zhai H, Zhang D, Ma S. A circular RNA derived from COL6A3 functions as a ceRNA in gastric cancer development. Biochem Biophys Res Commun 2019;515(1):16-23. https://pubmed.ncbi.nlm.nih.gov/31122696/
69. Xia T, Pan Z, Zhang J. CircPDZD8 promotes gastric cancer progression by regulating CHD9 via sponging miR-197-5p. Aging (Albany NY) 2020;12(19):19352-64. https://pubmed.ncbi.nlm.nih.gov/33049714/
70. Tang J, Zhu H, Lin J, Wang H. Knockdown of Circ_0081143 Mitigates Hypoxia-Induced Migration, Invasion, and EMT in Gastric Cancer Cells Through the miR-497-5p/EGFR Axis. Cancer Biother Radiopharm 2021;36(4):333-46. https://pubmed.ncbi.nlm.nih.gov/32678674/
71. Qu J, Li M, Zhong W, Hu C. Competing endogenous RNA in cancer: a new pattern of gene expression regulation. Int J Clin Exp Med 2015;8(10):17110-6. https://pubmed.ncbi.nlm.nih.gov/26770304/
72. Piquer-Gil M, Domenech-Dauder S, Sepúlveda-Gómez M, Machí-Camacho C, Braza-Boïls A, Zorio E. Non Coding RNAs as Regulators of Wnt/β-Catenin and Hippo Pathways in Arrhythmogenic Cardiomyopathy. Biomedicines 2022;10(10):2619. https://pubmed.ncbi.nlm.nih.gov/36289882/
73. Emadi-Baygi M, Sedighi R, Nourbakhsh N, Nikpour P. Pseudogenes in gastric cancer pathogenesis: a review article. Brief Funct Genomics 2017;16(6):348-60. https://pubmed.ncbi.nlm.nih.gov/28459995/
74. Pan Y, Zhan L, Chen L, Zhang H, Sun C, Xing C. POU5F1B promotes hepatocellular carcinoma proliferation by activating AKT. Biomed Pharmacother 2018;100:374-80. https://pubmed.ncbi.nlm.nih.gov/29454285/
75. Poliseno L, Marranci A, Pandolfi PP. Pseudogenes in Human Cancer. Front Med (Lausanne) 2015;2:68. https://pubmed.ncbi.nlm.nih.gov/26442270/
76. Zhang R, Guo Y, Ma Z, Ma G, Xue Q, Li F, et al. Long non-coding RNA PTENP1 functions as a ceRNA to modulate PTEN level by decoying miR-106b and miR-93 in gastric cancer. Oncotarget 2017;8(16):26079-89. https://pubmed.ncbi.nlm.nih.gov/28212532/